- Basic information
- CohesinDB ID: CDBP00419672
- Locus: chr21-40089448-40090020
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Data sourse: GSE25021, GSE67783
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Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 69%,
"14_ReprPCWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZSCAN5D, MYCN, ZNF263, TOP2A, NKX2-2, ZFX, CTBP1, XBP1, WT1, NONO, SUZ12, CDK9, ZKSCAN1, YY1, RELA, CREBBP, MYC, RAD21, GRHL3, ARNT, ZNF444, MAX, MAFB, NRIP1, PRDM14, ZNF143, NCOA3, EZH2, ESR1, SETDB1, CTCF, AR, SIX2, NOTCH3, BRD4, HNRNPLL, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops