- Basic information
- CohesinDB ID: CDBP00419674
- Locus: chr21-40109484-40110216
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Data sourse: GSE206145-NatGen2015, GSE67783, GSE86191
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Cell type: Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 63%,
"9_Het": 35%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): GET1-SH3BGR,B3GALT5,PCP4,SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 16
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000285815,
ENSG00000185437,
ENSG00000183778,
ENSG00000183036,
- Related loop:
chr21:39500000-39525000~~chr21:40100000-40125000,
chr21:39525000-39550000~~chr21:40100000-40125000,
chr21:39600000-39625000~~chr21:40100000-40125000,
chr21:39775000-39800000~~chr21:40100000-40125000,
chr21:39850000-39875000~~chr21:40100000-40125000,
chr21:39900000-39925000~~chr21:40100000-40125000,