- Basic information
- CohesinDB ID: CDBP00419685
- Locus: chr21-40155269-40155988
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 71%,
"9_Het": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CHD8, MYCN, ZFX, ZBTB48, WT1, TET2, RELA, SP140, ARNT, PROX1, GATA1, NR2F1, ESR1, OCA2, TP53, SETDB1, CTCF, BRD4, MAZ, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:31250000-31275000~~chr21:40150000-40175000,
chr21:40150000-40175000~~chr21:40275000-40300000,
chr21:40150000-40175000~~chr21:40375000-40400000,
chr21:40150000-40175000~~chr21:40400000-40425000,
chr21:40150000-40175000~~chr21:40425000-40450000,
chr21:40150000-40175000~~chr21:40775000-40800000,
chr21:40150000-40175000~~chr21:40825000-40850000,
chr21:40150000-40175000~~chr21:40900000-40925000,
chr21:40150000-40175000~~chr21:41000000-41025000,
chr21:40150000-40175000~~chr21:41025000-41050000,
chr21:40150000-40175000~~chr21:41050000-41075000,
chr21:40150000-40175000~~chr21:41075000-41100000,