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Basic information

CohesinDB ID: CDBP00419694

Locus: chr21-40178811-40179473

Data sourse: GSE86191, GSE206145-NatGen2015, GSE83726

Cell type: RH4, Fibroblast, HCT-116

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 38% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 59%, "9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, ZNF384, GATA2, MYC, MYCN, NR2F2, RAD21, SP140, GRHL3, EZH2, ZBTB48, WT1, OCA2, STAT1, ARNT, TET2, SETDB1, CTCF, ERG

Target gene symbol (double-evidenced CRMs): MX1,MX2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 208

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000183486, ENSG00000157601,

eachgene

Deatailed information for cohesin site CDBP00419694