- Basic information
- CohesinDB ID: CDBP00419699
- Locus: chr21-40187418-40188724
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 71%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, ZNF384, CBFA2T2, NEUROD1, TOP2A, RAD21, NME2, GRHL3, ESR1, ARNT, OTX2, CLOCK, STAT1, SETDB1, SMC3, EP300, AHR
- Target gene symbol (double-evidenced CRMs): MX1,MX2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 110
- Number of somatic mutations (non-coding): 0
- Related genes and loops