- Basic information
- CohesinDB ID: CDBP00419719
- Locus: chr21-40291252-40291932
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Data sourse: ENCSR000BLD, GSE97394, GSE67783, GSE105028
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Cell type: H1-hESC, HUES64, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD8, ZNF263, POU5F1, TOP2A, SOX2, ZFX, NME2, SMAD3, FOXA1, KDM1A, YY1, RELA, RAD21, CHD7, GRHL3, PRDM14, NR3C1, TEAD1, PIAS1, SMAD1, SETDB1, CTCF, TFAP2A, AR, PAX3-FOXO1, ASH2L, HSF1, CTBP2, BCOR, TEAD4, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): PCP4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops