- Basic information
- CohesinDB ID: CDBP00419723
- Locus: chr21-40310135-40310674
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, EBF1, TOP2A, FOXA1, ZNF300, ERG, RELA, HDGF, CREBBP, GR, ARNT, HIF1A, GRHL3, OTX2, GATA3, NRIP1, NR3C1, NCOA3, ESR1, NCOA1, GRHL2, ZNF334, SETDB1, TRPS1, CTCF, BCL11A, AR, HSF1, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops