- Basic information
- CohesinDB ID: CDBP00419735
- Locus: chr21-40367620-40368318
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Data sourse: ENCSR703TNG, GSE206145-GSE177045, GSE72082, GSE115602
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, PGR, CBX1, FOXA2, SIN3A, GTF2B, FOXA1, RELA, CREBBP, ZXDC, RFX1, RAD21, ARNT, GATA3, GABPA, SMARCE1, FOXM1, NRIP1, FOS, MED1, NR3C1, CEBPB, NCOA3, NR2F2, CREB1, ESR1, GRHL2, JUN, BRD2, TCF12, EP300, TFAP2A, AR, HDAC2, ATF7, JUND, MBD2, ZNF528, TEAD4, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): SH3BGR,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops