- Basic information
- CohesinDB ID: CDBP00419739
- Locus: chr21-40378457-40378940
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Data sourse: ENCSR000BKV, GSE86191, GSE36578, ENCSR000EGW, GSE206145-NatGen2015, GSE106870, ENCSR481YWD
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Cell type: Fibroblast, HCT-116, A-549, BGO3, K-562, CVI-hiPSC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"14_ReprPCWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, PGR, HMG20A, SOX2, NME2, XBP1, FOXA1, SUZ12, RXRB, ZFHX2, ZBTB7B, MEN1, BMI1, ATF3, CTCFL, CHD7, WDHD1, ZNF444, CBFB, MXD4, DPF1, SMARCE1, ZNF189, TEAD1, ELF1, TRIM28, RBM39, SNAI2, ETV1, SAP30, ESR1, ZNF217, ZNF561, JUN, TCF12, CTCF, EP300, BAF155, MNT, GATA6, DPF2, PAX8, E2F6, IRF4, TRIM24, MED12, RAD51, PRKDC, DDX20, ZNF512B, E2F1, NR5A2, SMC1, TEAD4, GTF2F1, GATAD2A, TFAP2C, EED, RBPJ, PDX1, NANOG, CHD8, MYCN, ZNF263, POU5F1, ID3, RUNX1T1, CTBP1, MTA2, ZBTB48, DUX4, STAT1, UTX, SRF, NONO, ZNF205, ARID3A, ERG2, ERG, OGG1, MYC, ONECUT1, SMARCA4, RFX1, EZH1, RAD21, FOXP2, GRHL3, NKX2-1, GABPA, STAT3, XRCC5, NKX3-1, RCOR1, HNRNPH1, NFE2, NR3C1, ESRRA, CEBPB, ZNF750, CREB1, ZBTB11, EZH2, JMJD6, GRHL2, TRPS1, GABPB1, ZHX2, SPI1, HES1, MIXL1, ZSCAN2, HDAC2, GATA2, GATAD2B, MXD3, SIX2, SREBF1, FLI1, HCFC1, MXI1, SMARCA5, MRTFB, NCOA2, RUNX1, THAP11, ZNF45A, CBX1, SMC1A, BCL6, EZH2phosphoT487, NKX2-2, LDB1, SIN3A, ZFX, SOX13, SMAD3, ZNF654, ERG3, NMYC, TRIM22, MEF2A, CREBBP, ZNF384, ZXDC, ZBTB2, RARA, TAF15, GR, ZNF184, ARNT, NFIB, ELK1, BACH1, SNIP1, ZNF48, SMAD4, FOXM1, ETV6, NCAPH2, CHD1, CDK8, FOS, HMGXB4, MAFB, MED1, TEAD3, PML, KDM6B, PIAS1, ZMYM3, SMAD1, KLF9, NCOA1, C11orf30, SETDB1, USF1, BCL11A, NIPBL, TFAP2A, MAFK, REST, ARID1A, POU2F3, ATF7, HNRNPLL, CTBP2, MBD2, FOXP1, BCOR, AATF, SMC3, STAG1, MLLT1, STAG2, TRP47, CBFA2T2, SAFB, FOXA2, MTA3, ZNF207, AGO1, TBL1X, E2F8, MIER2, CHD2, ZNF316, WT1, MAFF, MEF2C, ZBTB33, CDK9, HOXB13, ZKSCAN1, ZNF580, KDM1A, YY1, RELA, TARDBP, NEUROD1, SP140, ZIC2, HIF1A, OTX2, GATA3, ZNF519, MAX, NRIP1, GATA1, ZNF143, MTA1, TLE3, CEBPG, ZNF592, KLF4, NCOA3, NR2F2, NR2F1, TCF7L2, KDM5B, ZNF687, PKNOX1, TP53, EGR2, BRD2, ARID4B, AR, BHLHE40, TAF1, ZNF579, ZBTB40, YAP1, RXR, EGLN2, HEXIM1, EGR1, TFIIIC, HSF1, ZBTB26, BRD4, JUND, CLOCK, CUX1, MAZ, ZNF24, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): PCP4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 1
- Related genes and loops