- Basic information
- CohesinDB ID: CDBP00419749
- Locus: chr21-40414611-40418305
-
Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE138405, GSE25021, GSE76893, ENCSR404BPV, GSE105028, ENCSR198ZYJ, ENCSR703TNG, GSE126990, GSE115602
-
Cell type: MCF-7, Hela-Kyoto, Neurons-H1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 75%,
"9_Het": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, GATA6, CBX1, FOXA2, NKX2-2, FOXA1, GATA3, FOS, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 38
- Number of somatic mutations (non-coding): 0
- Related genes and loops