- Basic information
- CohesinDB ID: CDBP00419750
- Locus: chr21-40422725-40423364
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 77%,
"9_Het": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, NKX2-2, MYCN, CHD2, BRD3, ZFX, TOP2A, ZBTB17, FOXA1, MYC, RFX1, RAD21, ARNT, NRF1, GATA3, MAFB, NKX3-1, RCOR1, HAND2, NR3C1, CEBPB, PITX3, EBF3, PHOX2B, CTCF, EP300, GATA2, REST, ZNF366, SIX2, RFX5, BRD4, TEAD4, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 15
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:40125000-40150000~~chr21:40400000-40425000,
chr21:40125000-40150000~~chr21:40425000-40450000,
chr21:40150000-40175000~~chr21:40400000-40425000,
chr21:40150000-40175000~~chr21:40425000-40450000,
chr21:40175000-40200000~~chr21:40425000-40450000,
chr21:40425000-40450000~~chr21:40525000-40550000,
chr21:40425000-40450000~~chr21:40800000-40825000,
chr21:40425000-40450000~~chr21:40900000-40925000,
chr21:40425000-40450000~~chr21:41000000-41025000,
chr21:40425000-40450000~~chr21:41075000-41100000,