- Basic information
- CohesinDB ID: CDBP00419752
- Locus: chr21-40428191-40428332
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 84%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:40125000-40150000~~chr21:40400000-40425000,
chr21:40125000-40150000~~chr21:40425000-40450000,
chr21:40150000-40175000~~chr21:40400000-40425000,
chr21:40150000-40175000~~chr21:40425000-40450000,
chr21:40175000-40200000~~chr21:40425000-40450000,
chr21:40425000-40450000~~chr21:40525000-40550000,
chr21:40425000-40450000~~chr21:40800000-40825000,
chr21:40425000-40450000~~chr21:40900000-40925000,
chr21:40425000-40450000~~chr21:41000000-41025000,
chr21:40425000-40450000~~chr21:41075000-41100000,