- Basic information
- CohesinDB ID: CDBP00419757
- Locus: chr21-40460593-40461061
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"14_ReprPCWk": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, BRD3, EBF1, RUNX1T1, ZNF317, DUX4, FOXA1, KDM1A, CREBBP, NEUROD1, EOMES, ARNT, GRHL3, OTX2, NCOA3, ESR1, GRHL2, SETDB1, T, ELF3, CTCF, SPI1, EP300, REST, IRF4, POU2F3, NOTCH3, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): RIPK4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000183421,
- Related loop:
chr21:39975000-40000000~~chr21:40450000-40475000,
chr21:40300000-40325000~~chr21:40450000-40475000,
chr21:40450000-40475000~~chr21:40550000-40575000,
chr21:40450000-40475000~~chr21:40625000-40650000,
chr21:40450000-40475000~~chr21:40675000-40700000,
chr21:40450000-40475000~~chr21:40775000-40800000,
chr21:40450000-40475000~~chr21:40800000-40825000,
chr21:40450000-40475000~~chr21:40825000-40850000,
chr21:40450000-40475000~~chr21:40850000-40875000,
chr21:40450000-40475000~~chr21:40925000-40950000,
chr21:40450000-40475000~~chr21:41025000-41050000,
chr21:40450000-40475000~~chr21:41050000-41075000,
chr21:40450000-40475000~~chr21:41075000-41100000,
chr21:40450000-40475000~~chr21:41125000-41150000,
chr21:40450000-40475000~~chr21:41750000-41775000,
chr21:40465557-40467899~~chr21:40840912-40842965,
chr21:40465557-40467899~~chr21:41068145-41070397,
chr21:40465667-40468011~~chr21:40840995-40843250,
chr21:40465667-40468011~~chr21:41068097-41070414,
chr21:40465872-40468080~~chr21:40840988-40842938,
chr21:40465872-40468080~~chr21:41044806-41046966,