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Basic information

CohesinDB ID: CDBP00419760

Locus: chr21-40471203-40471451

Data sourse: ENCSR703TNG, ENCSR230ZWH, GSE72082, ENCSR917QNE

Cell type: MCF-7, Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 33% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 80%, "9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, CBX1, FOXA2, CEBPA, XBP1, SMAD3, FOXA1, ERG3, CDK9, ERG, KDM1A, RAD21, ARNT, HIF1A, TCF4, NKX2-1, MECOM, TAL1, CDK8, ZNF736, MED1, KLF4, TRIM28, KMT2A, KLF6, LMO2, ESR1, HNF1B, GRHL2, ZNF334, ELF3, TCF12, CTCF, SPI1, SP1, BCL11A, NR4A1, IRF1, ZBTB16, RXR, TRIM24, IRF4, EGLN2, BRD4, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): RIPK4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000183421,

eachgene

Deatailed information for cohesin site CDBP00419760