- Basic information
- CohesinDB ID: CDBP00419761
- Locus: chr21-40473897-40474333
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 78%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CREB1, ATF7, EZH2, ARNT, JUND, ATF2, SMC3, AHR
- Target gene symbol (double-evidenced CRMs): RIPK4
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000183421,
- Related loop:
chr21:39975000-40000000~~chr21:40450000-40475000,
chr21:40300000-40325000~~chr21:40450000-40475000,
chr21:40450000-40475000~~chr21:40550000-40575000,
chr21:40450000-40475000~~chr21:40625000-40650000,
chr21:40450000-40475000~~chr21:40675000-40700000,
chr21:40450000-40475000~~chr21:40775000-40800000,
chr21:40450000-40475000~~chr21:40800000-40825000,
chr21:40450000-40475000~~chr21:40825000-40850000,
chr21:40450000-40475000~~chr21:40850000-40875000,
chr21:40450000-40475000~~chr21:40925000-40950000,
chr21:40450000-40475000~~chr21:41025000-41050000,
chr21:40450000-40475000~~chr21:41050000-41075000,
chr21:40450000-40475000~~chr21:41075000-41100000,
chr21:40450000-40475000~~chr21:41125000-41150000,
chr21:40450000-40475000~~chr21:41750000-41775000,
chr21:40475000-40500000~~chr21:40600000-40625000,
chr21:40475000-40500000~~chr21:40775000-40800000,
chr21:40475000-40500000~~chr21:40800000-40825000,
chr21:40475000-40500000~~chr21:40825000-40850000,
chr21:40475000-40500000~~chr21:41000000-41025000,
chr21:40475000-40500000~~chr21:41075000-41100000,
chr21:40475000-40500000~~chr21:46125000-46150000,