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Basic information

CohesinDB ID: CDBP00419762

Locus: chr21-40475510-40475791

Data sourse: GSE206145-NatGen2015, GSE206145-GSE177045

Cell type: MCF-7, Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Mau2,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 33% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 82%, "9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MYCN, ZNF263, ZFX, XBP1, ZBTB48, WT1, TET2, RELA, MYC, SP140, SMC3, MED1, NCOA3, EZH2, KDM5B, ESR1, STAG1, GRHL2, SETDB1, CTCF, MAFK, AR, HSF1, BRD4, HCFC1R1, NCOA2, PDX1, TFAP2C

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 2

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00419762