- Basic information
- CohesinDB ID: CDBP00419764
- Locus: chr21-40482436-40483088
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE76893, ENCSR000EHX, ENCSR703TNG, GSE25021
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Cell type: MCF-7, Liver, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
33% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, FOXA2, NKX2-2, XBP1, SMAD3, FOXA1, HOXB13, ERG, RELA, PBX1, AHR, NFIC, RFX1, RAD21, NFIB, HIF1A, GRHL3, GATA3, TAL1, NRIP1, FOS, NKX3-1, TLE3, PDX1, NCOA3, TEAD1, KMT2A, CREB1, PIAS1, LMO2, ESR1, SETDB1, CTCF, EP300, BAF155, AR, REST, GATA2, NCOR1, TCF3, FOXP1, SMC3, STAG1, RBPJ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops