- Basic information
- CohesinDB ID: CDBP00419768
- Locus: chr21-40504593-40505325
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE105028, ENCSR000ECE, ENCSR703TNG, GSE25021, GSE97394
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Cell type: MCF-7, H1-hESC, HUES64, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, FOXA2, EBF1, KDM4C, ZFX, POU4F2, XBP1, FOXA1, RELA, NEUROD1, MYC, RUNX2, SMARCA4, GATA4, RAD21, ARNT, GRHL3, CBFB, GATA3, SMC3, MAX, CEBPB, NCOA3, NR2F2, EZH2, ESR1, OCA2, NCOA1, SETDB1, MYOD1, CTCF, BAF155, AR, ZBTB40, NOTCH3, CTBP2, BRD4, ZIM3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops