- Basic information
- CohesinDB ID: CDBP00419775
- Locus: chr21-40520529-40521955
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE76893, ENCSR000BLY, GSE105028, ENCSR000ECE, ENCSR054FKH, ENCSR000EHX, GSE68388, ENCSR703TNG, GSE25021
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Cell type: MCF-7, H1-hESC, Hep-G2, SK-N-SH, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: Mau2,SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, CBX1, FOXA2, NKX2-2, CTBP1, XBP1, DUX4, FOXA1, ZNF574, ERG3, HOXB13, HNRNPK, ERG, ZXDC, AHR, ONECUT1, RFX1, RAD21, PRDM1, GATA3, STAT3, MAX, MAFB, NRIP1, NKX3-1, CDK8, VDR, TLE3, ESRRA, CEBPB, PDX1, NR2F2, TEAD1, PIAS1, ZNF217, ESR1, CTCF, SPI1, NR4A1, AR, PAX8, HDAC2, GATA2, FOXP1, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 11
- Number of somatic mutations (non-coding): 0
- Related genes and loops