- Basic information
- CohesinDB ID: CDBP00419778
- Locus: chr21-40530847-40531323
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Data sourse: GSE120943, GSE86191, GSE98367
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Cell type: HCT-116, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 69%,
"9_Het": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, ZNF283, CHD8, CBX1, TBL1X, POU5F1, MYCN, ZSCAN5D, ZFX, ZNF534, XBP1, ZBTB48, WT1, FOXA1, ZKSCAN1, YY1, RELA, MYC, SP140, NFIB, ZNF444, HIF1A, ARNT, GRHL3, ZNF143, TEAD1, EZH2, ESR1, OCA2, SETDB1, CTCF, JUN, AR, ZNF366, HSF1, NCOR1, BRD4, SCRT1, SMC3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops