- Basic information
- CohesinDB ID: CDBP00419789
- Locus: chr21-40563474-40564640
-
Data sourse: GSE62063, ENCSR230ZWH, ENCSR917QNE
-
Cell type: Liver, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 75%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, PGR, MAFG, FOXA2, NKX2-2, ZFX, WT1, MAFF, FOXA1, CDK9, HOXB13, ERG, YY1, RELA, CREBBP, ZNF90, MYC, RAD21, GRHL3, ARNT, RXRA, GABPA, MAX, MAFB, NKX3-1, CDK8, MITF, DNMT3B, HDAC3, NCOA3, NR2F2, EZH2, ESR1, MLL, SETDB1, CTCF, MAFK, SP1, AR, HDAC2, GATA2, E2F6, ASH2L, NOTCH3, BRD4, FOXP1, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 19
- Number of somatic mutations (non-coding): 0
- Related genes and loops