- Basic information
- CohesinDB ID: CDBP00419795
- Locus: chr21-40605883-40606765
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Data sourse: GSE206145-GSE177045, GSE111913, ENCSR917QNE
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Cell type: MCF-7, Liver, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"9_Het": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, FOXA2, TOP2A, ZFX, POU4F2, DUX4, FOXA1, ZBTB33, HOXB13, ERG, YY1, RELA, CREBBP, ZNF384, ONECUT1, MYC, RAD21, GRHL3, HIF1A, ARNT, RXRA, GATA3, GABPA, NRIP1, ZNF143, MED1, VDR, TLE3, NR3C1, ESRRA, CSNK2A1, NCOA3, NR2F2, TEAD1, TRIM28, TFAP2C, PIAS1, SNAI2, EZH2, ESR1, GRHL2, SETDB1, ZNF22, SP1, BAF155, EP300, HNF4A, AR, PAX8, GATA2, EGLN2, ASH2L, JUND, FOXP1, NCOA2, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops