- Basic information
- CohesinDB ID: CDBP00419799
- Locus: chr21-40628172-40628784
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SIN3A, NME2, WT1, FOXA1, DDX5, HOXB13, ERG, USP7, NFIB, GRHL3, GATA3, TLE3, ESRRA, PIAS1, ESR1, GRHL2, CTCF, BAF155, AR, GATA2, RELB
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:39750000-39775000~~chr21:40625000-40650000,
chr21:40125000-40150000~~chr21:40625000-40650000,
chr21:40175000-40200000~~chr21:40625000-40650000,
chr21:40325000-40350000~~chr21:40600000-40625000,
chr21:40450000-40475000~~chr21:40625000-40650000,
chr21:40475000-40500000~~chr21:40600000-40625000,
chr21:40600000-40625000~~chr21:40800000-40825000,
chr21:40600000-40625000~~chr21:40875000-40900000,
chr21:40600000-40625000~~chr21:41000000-41025000,
chr21:40625000-40650000~~chr21:41075000-41100000,