- Basic information
- CohesinDB ID: CDBP00419801
- Locus: chr21-40629965-40630184
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NR2F2, SP1, RAD21, ARNT, RXRA, CDK8, SPI1, YY1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:39750000-39775000~~chr21:40625000-40650000,
chr21:40125000-40150000~~chr21:40625000-40650000,
chr21:40175000-40200000~~chr21:40625000-40650000,
chr21:40325000-40350000~~chr21:40600000-40625000,
chr21:40450000-40475000~~chr21:40625000-40650000,
chr21:40475000-40500000~~chr21:40600000-40625000,
chr21:40600000-40625000~~chr21:40800000-40825000,
chr21:40600000-40625000~~chr21:40875000-40900000,
chr21:40600000-40625000~~chr21:41000000-41025000,
chr21:40625000-40650000~~chr21:41075000-41100000,