- Basic information
- CohesinDB ID: CDBP00419806
- Locus: chr21-40650226-40650486
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Data sourse: GSE25021, GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 76%,
"9_Het": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, POU2F2, CBX1, PGR, POU5F1, MYCN, ZFX, CTBP1, XBP1, DUX4, ZBTB48, WT1, FOXA1, RELA, CREBBP, MYC, SP140, HIF1A, OTX2, GATA3, MAX, TP63, NRIP1, TLE3, NCOA3, TRIM28, ZNF680, PIAS1, ZNF217, ESR1, OCA2, NCOA1, GRHL2, SETDB1, CTCF, AR, PAX3-FOXO1, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops