- Basic information
- CohesinDB ID: CDBP00419809
- Locus: chr21-40662298-40662901
-
Data sourse: GSE206145-GSE177045
-
Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 86%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NCOA2, POU5F1, MYCN, CRY1, TOP2A, ZFX, ZNF621, ZNF317, NME2, FOXA1, DDX5, SUZ12, HOXB13, ZKSCAN1, ERG, RELA, ZNF148, BMI1, ARNT, GRHL3, ZNF48, FOXK2, ZNF8, ZSCAN4, ZNF143, FOS, CREB1, ZNF544, EZH2, TP53, ESR1, OCA2, ZNF334, SETDB1, HES1, MNT, IRF1, TAF1, SSRP1, BRD4, ZNF512B, CLOCK, SMC3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops