- Basic information
- CohesinDB ID: CDBP00419814
- Locus: chr21-40683649-40684444
-
Data sourse: GSE206145-NatGen2015, GSE111913, GSE67783, GSE86191
-
Cell type: RT-112, Fibroblast, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 66%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MYCN, ZNF534, ZFX, ZBTB48, WT1, YY1, RELA, MYC, SMARCA4, CHD7, NKX2-1, PRDM9, MAX, ESRRA, ZNF264, TRIM28, ZNF26, SCRT2, TP53, OCA2, SETDB1, CTCF, PAX8, GATAD2B, BRD4, ZNF512B, SCRT1, FOXP1, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops