- Basic information
- CohesinDB ID: CDBP00419817
- Locus: chr21-40696156-40696595
-
Data sourse: GSE206145-GSE177045, GSE67783
-
Cell type: MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 79%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: SMC1A, CHD8, MYCN, EBF1, KDM4C, ZFX, TBP, ATF3, MYC, GRHL3, HIF1A, MAX, TP63, MED1, NCOA3, SNAI2, EZH2, TP53, ESR1, OCA2, SETDB1, CTCF, ARRB1, GSPT2, AR, BRD4, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 1
- Number of somatic mutations (non-coding): 0
- Related genes and loops