- Basic information
- CohesinDB ID: CDBP00419820
- Locus: chr21-40706794-40708150
-
Data sourse: ENCSR198ZYJ, ENCSR404BPV
-
Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 82%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, PAX7, FOXO1, CHD8, POU5F1, SOX2, SMAD3, FOXA1, HOXB13, MLL4, ZBTB21, RELA, JUNB, RAD21, SP3, ATF4, NKX2-1, PROX1, STAT3, TP63, FOS, RCOR1, CEBPG, CEBPB, TEAD1, CREB1, TCF7L2, TP53, SETDB1, JUN, EP300, AR, REST, ATF7, JUND, BRD4, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 13
- Number of somatic mutations (non-coding): 0
- Related genes and loops