- Basic information
- CohesinDB ID: CDBP00419821
- Locus: chr21-40711457-40711808
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE72082, GSE86191, GSE76893, GSE105028, ENCSR703TNG, GSE25021, GSE115602
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Cell type: MCF-7, H1-hESC, HCT-116, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 75%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, POU2F2, SMC1A, MYCN, EBF1, ZFX, XBP1, ZBTB33, RAD21, GRHL3, HIF1A, NRIP1, ZNF143, MED1, NCOA3, EZH2, ESR1, OCA2, SETDB1, CTCF, AR, MAZ, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops