- Basic information
- CohesinDB ID: CDBP00419823
- Locus: chr21-40719415-40720592
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE129526, GSE25021, ENCSR000BLY, GSE76893, GSE131577, GSE105028, GSE101921, ENCSR000ECE, ENCSR000EHX, ENCSR198ZYJ, ENCSR703TNG, GSE106870, GSE145327, GSE97394, GSE115602
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Cell type: MCF-7, H1-hESC, HMEC, HL-60, HCT-116, Neurons-H1, CVB-hiPSC, HUES64, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, FOXA2, STAG2, FOXA1, TRIM22, CREBBP, ZXDC, AHR, RAD21, HIF1A, GATA3, ETV6, MAX, FOS, SMAD1, KDM5B, ESR1, PKNOX1, CTCF, MNT, GATA2, IRF4, BRD4, CUX1, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:40125000-40150000~~chr21:40700000-40725000,
chr21:40700000-40725000~~chr21:40825000-40850000,
chr21:40700000-40725000~~chr21:41025000-41050000,
chr21:40700000-40725000~~chr21:41050000-41075000,
chr21:40718539-40720597~~chr21:41068151-41070181,
chr21:40718930-40720732~~chr21:41068068-41070387,
chr21:40718939-40720561~~chr21:41068151-41070172,
chr21:40718992-40720551~~chr21:41068042-41070202,
chr21:40719048-40720726~~chr21:41068096-41070184,
chr21:40719112-40720557~~chr21:41068059-41070218,
chr21:40719112-40720557~~chr21:41070922-41072244,
chr21:40719160-40720470~~chr21:41071015-41072298,
chr21:40719251-40720453~~chr21:41070979-41072230,
chr21:40725000-40750000~~chr21:41025000-41050000,
chr21:40725000-40750000~~chr21:41050000-41075000,