- Basic information
- CohesinDB ID: CDBP00419824
- Locus: chr21-40727811-40728129
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Data sourse: GSE105028, GSE206145-NatGen2015, GSE206145-GSE177045, GSE86191
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Cell type: MCF-7, Fibroblast, HCT-116, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF263, MYCN, ZFX, XBP1, ZBTB48, WT1, FOXA1, TET2, SUZ12, YY1, RELA, MYC, SP140, NRIP1, ZNF143, MED1, NCOA3, EZH2, ESR1, ZNF334, SETDB1, CTCF, GSPT2, AR, NOTCH3, BRD4, MAZ, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops