- Basic information
- CohesinDB ID: CDBP00419828
- Locus: chr21-40738752-40739372
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Data sourse: GSE206145-GSE177045, GSE67783, GSE86191
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Cell type: MCF-7, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, MYCN, EBF1, ZFX, WT1, DUX4, FOXA1, SUZ12, RELA, ZNF384, NEUROD1, ATF3, MYC, ZNF362, SP140, GRHL3, HIF1A, OTX2, SMARCE1, ZNF143, SNAI2, ESR1, ZNF334, SETDB1, ZNF22, CTCF, PAX3-FOXO1, AR, GATA6, MAZ, SMC3, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops