- Basic information
- CohesinDB ID: CDBP00419832
- Locus: chr21-40765697-40766251
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Data sourse: ENCSR198ZYJ, ENCSR404BPV, GSE115250
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Cell type: Neurons-H1, TC-32
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 72%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, POU2F2, CHD8, TBL1X, MYCN, EBF1, SOX2, ZFX, TEAD4, XBP1, ZBTB17, ZBTB48, WT1, SUZ12, YY1, RELA, CREBBP, ZNF384, ASCL1, NEUROD1, MYC, SMARCA4, RAD21, SP140, OTX2, MAX, MED1, NCOA3, EZH2, ESR1, TP53, SETDB1, MYOD1, ZNF22, JUN, EP300, AR, REST, SIX2, HSF1, NOTCH3, BRD4, MAZ, SMC3, MYF5
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops