- Basic information
- CohesinDB ID: CDBP00419835
- Locus: chr21-40797851-40798154
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Data sourse: GSE206145-GSE177045, GSE165895
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Cell type: MCF-7, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NR3C1, GATA2, TEAD1, TOP2A, ESR1, FOXA1, GATA3
- Target gene symbol (double-evidenced CRMs): MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157601,
- Related loop:
chr21:40150000-40175000~~chr21:40775000-40800000,
chr21:40425000-40450000~~chr21:40800000-40825000,
chr21:40450000-40475000~~chr21:40775000-40800000,
chr21:40450000-40475000~~chr21:40800000-40825000,
chr21:40475000-40500000~~chr21:40775000-40800000,
chr21:40475000-40500000~~chr21:40800000-40825000,
chr21:40600000-40625000~~chr21:40800000-40825000,
chr21:40675000-40700000~~chr21:40775000-40800000,
chr21:40675000-40700000~~chr21:40800000-40825000,
chr21:40775000-40800000~~chr21:40875000-40900000,
chr21:40775000-40800000~~chr21:41075000-41100000,
chr21:40775000-40800000~~chr21:41425000-41450000,
chr21:40800000-40825000~~chr21:40900000-40925000,
chr21:40800000-40825000~~chr21:41000000-41025000,
chr21:40800000-40825000~~chr21:41425000-41450000,