- Basic information
- CohesinDB ID: CDBP00419838
- Locus: chr21-40817330-40818571
-
Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR198ZYJ
-
Cell type: RPE, Fibroblast, HCT-116, Neurons-H1, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 82%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PAX7, TRP47, OGG1, ELF1, EZH2phosphoT487, NKX2-2, TOP2A, CREB1, FLI1, POU2F3, MAFF, ZBTB48, SMARCC1, SUZ12, PHOX2B, MAFK, CDK8, PDX1, HAND2
- Target gene symbol (double-evidenced CRMs): MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops