- Basic information
- CohesinDB ID: CDBP00419839
- Locus: chr21-40818919-40820216
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Data sourse: GSE115250
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Cell type: TC-32
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 79%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, RELA, ZNF384, SMARCA2, ELF1, NKX2-2, ZNF680, FLI1, EZH2, XBP1, ESR1, FOXA1, CUX1, NKX3-1, NRIP1, ERG, SMARCC1, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): MX1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000157601,
- Related loop:
chr21:40125000-40150000~~chr21:40825000-40850000,
chr21:40150000-40175000~~chr21:40825000-40850000,
chr21:40425000-40450000~~chr21:40800000-40825000,
chr21:40450000-40475000~~chr21:40800000-40825000,
chr21:40450000-40475000~~chr21:40825000-40850000,
chr21:40475000-40500000~~chr21:40800000-40825000,
chr21:40475000-40500000~~chr21:40825000-40850000,
chr21:40525000-40550000~~chr21:40825000-40850000,
chr21:40575000-40600000~~chr21:40825000-40850000,
chr21:40600000-40625000~~chr21:40800000-40825000,
chr21:40675000-40700000~~chr21:40800000-40825000,
chr21:40700000-40725000~~chr21:40825000-40850000,
chr21:40800000-40825000~~chr21:40900000-40925000,
chr21:40800000-40825000~~chr21:41000000-41025000,
chr21:40800000-40825000~~chr21:41425000-41450000,
chr21:40825000-40850000~~chr21:41025000-41050000,
chr21:40825000-40850000~~chr21:41050000-41075000,