- Basic information
- CohesinDB ID: CDBP00419841
- Locus: chr21-40834208-40834431
-
Data sourse: ENCSR000BLD, GSE206145-NatGen2015, GSE105028
-
Cell type: H1-hESC, Fibroblast, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 69%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:40125000-40150000~~chr21:40825000-40850000,
chr21:40150000-40175000~~chr21:40825000-40850000,
chr21:40450000-40475000~~chr21:40825000-40850000,
chr21:40475000-40500000~~chr21:40825000-40850000,
chr21:40525000-40550000~~chr21:40825000-40850000,
chr21:40575000-40600000~~chr21:40825000-40850000,
chr21:40700000-40725000~~chr21:40825000-40850000,
chr21:40825000-40850000~~chr21:41025000-41050000,
chr21:40825000-40850000~~chr21:41050000-41075000,
chr21:40833338-40835222~~chr21:41044725-41047059,