- Basic information
- CohesinDB ID: CDBP00419842
- Locus: chr21-40839291-40840240
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 52%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MED1, CEBPB, IRF4, POU5F1, RAD21, BRD4, STAT3, CTCF
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:40125000-40150000~~chr21:40825000-40850000,
chr21:40143196-40145254~~chr21:40841232-40842970,
chr21:40143235-40145160~~chr21:40841024-40843128,
chr21:40143263-40145135~~chr21:40841259-40842961,
chr21:40150000-40175000~~chr21:40825000-40850000,
chr21:40450000-40475000~~chr21:40825000-40850000,
chr21:40465557-40467899~~chr21:40840912-40842965,
chr21:40465667-40468011~~chr21:40840995-40843250,
chr21:40465872-40468080~~chr21:40840988-40842938,
chr21:40466129-40468033~~chr21:40841024-40843128,
chr21:40466131-40467839~~chr21:40840989-40842899,
chr21:40466218-40467881~~chr21:40841049-40843350,
chr21:40466465-40467826~~chr21:40840980-40842929,
chr21:40475000-40500000~~chr21:40825000-40850000,
chr21:40504438-40505740~~chr21:40840988-40842938,
chr21:40525000-40550000~~chr21:40825000-40850000,
chr21:40575000-40600000~~chr21:40825000-40850000,
chr21:40578148-40579678~~chr21:40841367-40842877,
chr21:40700000-40725000~~chr21:40825000-40850000,
chr21:40825000-40850000~~chr21:41025000-41050000,
chr21:40825000-40850000~~chr21:41050000-41075000,
chr21:40833338-40835222~~chr21:41044725-41047059,
chr21:40840980-40842929~~chr21:41068151-41070172,
chr21:40841049-40843350~~chr21:41006848-41008091,
chr21:40841049-40843350~~chr21:41044725-41047059,
chr21:40841049-40843350~~chr21:41068068-41070387,
chr21:40841136-40842853~~chr21:41070891-41072415,
chr21:40841259-40842961~~chr21:41068059-41070218,
chr21:40841274-40842934~~chr21:41068185-41070081,