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Basic information

CohesinDB ID: CDBP00419847

Locus: chr21-40850612-40850756

Data sourse: ENCSR000BLD, GSE25021

Cell type: MCF-7, H1-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "14_ReprPCWk": 44%, "15_Quies": 38%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, BCL6, CEBPA, NKX2-2, EBF1, ZBTB17, FOXA1, MEF2C, ZBTB21, ASCL1, ATF3, MYC, RAD21, ATF4, ATF2, MAX, CDK8, MITF, CEBPG, CEBPB, MYB, SCRT2, ESR1, SETDB1, JUN, CTCF, SPI1, EHF, ZNF366, ATF7, BRD4, JUND, STAG1, RBPJ

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00419847