- Basic information
- CohesinDB ID: CDBP00419852
- Locus: chr21-40870885-40870950
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 73%,
"9_Het": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CEBPG, ATF3, FOXA2, CREB1, ATF7, ZNF184, PRDM1, CTBP1, ZNF317, ATF4, FOXA1, SETDB1, PHOX2B, CTCF
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:40325000-40350000~~chr21:40875000-40900000,
chr21:40450000-40475000~~chr21:40850000-40875000,
chr21:40600000-40625000~~chr21:40875000-40900000,
chr21:40775000-40800000~~chr21:40875000-40900000,
chr21:40850000-40875000~~chr21:40950000-40975000,
chr21:40850000-40875000~~chr21:41025000-41050000,
chr21:40850000-40875000~~chr21:41050000-41075000,
chr21:40850000-40875000~~chr21:41075000-41100000,
chr21:40875000-40900000~~chr21:41000000-41025000,
chr21:40875000-40900000~~chr21:41025000-41050000,
chr21:40875000-40900000~~chr21:41175000-41200000,