- Basic information
- CohesinDB ID: CDBP00419857
- Locus: chr21-40909892-40910447
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE67783, GSE72082, GSE105028, ENCSR703TNG, GSE25021
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Cell type: MCF-7, H1-hESC, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"14_ReprPCWk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, ZSCAN5D, MYCN, ZNF263, KDM4C, ZFX, XBP1, WT1, ZNF133, RAD21, GRHL3, ESR1, SETDB1, JUN, CTCF, AR, BRD4, MAZ, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000182240,
- Related loop:
chr21:40125000-40150000~~chr21:40900000-40925000,
chr21:40150000-40175000~~chr21:40900000-40925000,
chr21:40175000-40200000~~chr21:40900000-40925000,
chr21:40425000-40450000~~chr21:40900000-40925000,
chr21:40750000-40775000~~chr21:40900000-40925000,
chr21:40800000-40825000~~chr21:40900000-40925000,
chr21:40900000-40925000~~chr21:41000000-41025000,
chr21:40900000-40925000~~chr21:41050000-41075000,
chr21:40900000-40925000~~chr21:41200000-41225000,