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Basic information

CohesinDB ID: CDBP00419860

Locus: chr21-40919272-40920574

Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE25021, GSE105028, ENCSR000ECE, ENCSR703TNG, GSE145327, GSE97394

Cell type: MCF-7, H1-hESC, HUES64, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 37% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 77%, "9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, PGR, JUNB, CBX1, NR2F2, NFIC, HOXB13, ZNF143, RAD21, NFIB, JUN, SETDB1, NFKB1, STAT3, CTCF, FOS, STAG1, FOSL2

Target gene symbol (double-evidenced CRMs): BACE2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 11

Related genes and loops

Related gene: ENSG00000182240,

eachgene

Deatailed information for cohesin site CDBP00419860