- Basic information
- CohesinDB ID: CDBP00419864
- Locus: chr21-40947904-40948058
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Data sourse: ENCSR000BLD, GSE105028
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Cell type: H1-hESC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, TAF1, ZNF384, NANOG, POU5F1, TRIM28, SOX2, CHD7, KDM5B, STAT3, TCF12, USF1, SP1, AHR, YY1
- Target gene symbol (double-evidenced CRMs): BACE2,B3GALT5,MX2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000183778,
ENSG00000182240,
ENSG00000183486,
- Related loop:
chr21:39650000-39675000~~chr21:40925000-40950000,
chr21:39975000-40000000~~chr21:40925000-40950000,
chr21:40175000-40200000~~chr21:40925000-40950000,
chr21:40300000-40325000~~chr21:40925000-40950000,
chr21:40450000-40475000~~chr21:40925000-40950000,
chr21:40750000-40775000~~chr21:40925000-40950000,
chr21:40850000-40875000~~chr21:40950000-40975000,
chr21:40925000-40950000~~chr21:41025000-41050000,
chr21:40925000-40950000~~chr21:41050000-41075000,
chr21:40925000-40950000~~chr21:41075000-41100000,
chr21:40925000-40950000~~chr21:41200000-41225000,
chr21:40925000-40950000~~chr21:41375000-41400000,
chr21:40925000-40950000~~chr21:41650000-41675000,
chr21:40925000-40950000~~chr21:41700000-41725000,