- Basic information
- CohesinDB ID: CDBP00419873
- Locus: chr21-40996497-40996765
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Data sourse: GSE206145-GSE177045, GSE67783, ENCSR153HNT
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Cell type: K-562, MCF-7, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
- Related loop:
chr21:39600000-39625000~~chr21:41000000-41025000,
chr21:40125000-40150000~~chr21:41000000-41025000,
chr21:40150000-40175000~~chr21:41000000-41025000,
chr21:40325000-40350000~~chr21:41000000-41025000,
chr21:40425000-40450000~~chr21:41000000-41025000,
chr21:40475000-40500000~~chr21:41000000-41025000,
chr21:40600000-40625000~~chr21:41000000-41025000,
chr21:40650000-40675000~~chr21:41000000-41025000,
chr21:40800000-40825000~~chr21:41000000-41025000,
chr21:40875000-40900000~~chr21:41000000-41025000,
chr21:40900000-40925000~~chr21:41000000-41025000,
chr21:41000000-41025000~~chr21:41425000-41450000,
chr21:41000000-41025000~~chr21:43350000-43375000,