- Basic information
- CohesinDB ID: CDBP00419874
- Locus: chr21-41007428-41007579
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Data sourse: ENCSR000BTQ, GSE25021, GSE105028, GSE72082
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Cell type: MCF-7, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 66%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384, ZNF283, ZNF22, EP300, MYCN, ZFX, NCOR1, ZNF548, HNRNPLL, WT1, ARNT, CLOCK, PRDM9, MAZ, MNT, SMC3, CTCF, BCL11A, STAG1, YY1
- Target gene symbol (double-evidenced CRMs): MX1,B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000183778,
ENSG00000157601,
- Related loop:
chr21:39600000-39625000~~chr21:41000000-41025000,
chr21:40125000-40150000~~chr21:41000000-41025000,
chr21:40150000-40175000~~chr21:41000000-41025000,
chr21:40325000-40350000~~chr21:41000000-41025000,
chr21:40425000-40450000~~chr21:41000000-41025000,
chr21:40475000-40500000~~chr21:41000000-41025000,
chr21:40600000-40625000~~chr21:41000000-41025000,
chr21:40650000-40675000~~chr21:41000000-41025000,
chr21:40800000-40825000~~chr21:41000000-41025000,
chr21:40841049-40843350~~chr21:41006848-41008091,
chr21:40875000-40900000~~chr21:41000000-41025000,
chr21:40900000-40925000~~chr21:41000000-41025000,
chr21:41000000-41025000~~chr21:41425000-41450000,
chr21:41000000-41025000~~chr21:43350000-43375000,