- Basic information
- CohesinDB ID: CDBP00419879
- Locus: chr21-41023102-41023234
-
Data sourse: GSE120943, GSE98367
-
Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 71%,
"14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): MX1,B3GALT5
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000183778,
ENSG00000157601,
- Related loop:
chr21:39600000-39625000~~chr21:41000000-41025000,
chr21:40125000-40150000~~chr21:41000000-41025000,
chr21:40125000-40150000~~chr21:41025000-41050000,
chr21:40150000-40175000~~chr21:41000000-41025000,
chr21:40150000-40175000~~chr21:41025000-41050000,
chr21:40325000-40350000~~chr21:41000000-41025000,
chr21:40425000-40450000~~chr21:41000000-41025000,
chr21:40450000-40475000~~chr21:41025000-41050000,
chr21:40475000-40500000~~chr21:41000000-41025000,
chr21:40575000-40600000~~chr21:41025000-41050000,
chr21:40600000-40625000~~chr21:41000000-41025000,
chr21:40650000-40675000~~chr21:41000000-41025000,
chr21:40700000-40725000~~chr21:41025000-41050000,
chr21:40725000-40750000~~chr21:41025000-41050000,
chr21:40800000-40825000~~chr21:41000000-41025000,
chr21:40825000-40850000~~chr21:41025000-41050000,
chr21:40850000-40875000~~chr21:41025000-41050000,
chr21:40875000-40900000~~chr21:41000000-41025000,
chr21:40875000-40900000~~chr21:41025000-41050000,
chr21:40900000-40925000~~chr21:41000000-41025000,
chr21:40925000-40950000~~chr21:41025000-41050000,
chr21:41000000-41025000~~chr21:41425000-41450000,
chr21:41000000-41025000~~chr21:43350000-43375000,