- Basic information
- CohesinDB ID: CDBP00419884
- Locus: chr21-41036645-41036916
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Data sourse: ENCSR000BTQ, GSE105028, ENCSR198ZYJ, GSE72082
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Cell type: MCF-7, Neurons-H1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 75%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, AR, POU2F2, REST, NCOA3, MYC, NKX2-2, ZNF182, SOX2, RAD21, EZH2, ARNT, XBP1, ESR1, FOXA1, MAX, CTCF, EP300, PDX1, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
- Related loop:
chr21:40125000-40150000~~chr21:41025000-41050000,
chr21:40150000-40175000~~chr21:41025000-41050000,
chr21:40450000-40475000~~chr21:41025000-41050000,
chr21:40575000-40600000~~chr21:41025000-41050000,
chr21:40700000-40725000~~chr21:41025000-41050000,
chr21:40725000-40750000~~chr21:41025000-41050000,
chr21:40825000-40850000~~chr21:41025000-41050000,
chr21:40850000-40875000~~chr21:41025000-41050000,
chr21:40875000-40900000~~chr21:41025000-41050000,
chr21:40925000-40950000~~chr21:41025000-41050000,