- Basic information
- CohesinDB ID: CDBP00419885
- Locus: chr21-41039238-41039475
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Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, CREBBP, ZNF90, ZFX, ARNT, ESR1, DUX4, NFKB1, CTCF, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop:
chr21:40125000-40150000~~chr21:41025000-41050000,
chr21:40143268-40144900~~chr21:41042582-41043894,
chr21:40150000-40175000~~chr21:41025000-41050000,
chr21:40450000-40475000~~chr21:41025000-41050000,
chr21:40575000-40600000~~chr21:41025000-41050000,
chr21:40700000-40725000~~chr21:41025000-41050000,
chr21:40725000-40750000~~chr21:41025000-41050000,
chr21:40825000-40850000~~chr21:41025000-41050000,
chr21:40850000-40875000~~chr21:41025000-41050000,
chr21:40875000-40900000~~chr21:41025000-41050000,
chr21:40925000-40950000~~chr21:41025000-41050000,