- Basic information
- CohesinDB ID: CDBP00419893
- Locus: chr21-41085108-41085434
-
Data sourse: GSE120943, GSE67783, GSE98367
-
Cell type: Monocytes, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
67% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 64%,
"14_ReprPCWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): B3GALT5,SH3BGR,BACE2,GET1-SH3BGR
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000285815,
ENSG00000185437,
ENSG00000183778,
ENSG00000182240,
- Related loop:
chr21:39500000-39525000~~chr21:41075000-41100000,
chr21:39600000-39625000~~chr21:41075000-41100000,
chr21:40125000-40150000~~chr21:41075000-41100000,
chr21:40150000-40175000~~chr21:41075000-41100000,
chr21:40175000-40200000~~chr21:41075000-41100000,
chr21:40425000-40450000~~chr21:41075000-41100000,
chr21:40450000-40475000~~chr21:41075000-41100000,
chr21:40475000-40500000~~chr21:41075000-41100000,
chr21:40625000-40650000~~chr21:41075000-41100000,
chr21:40650000-40675000~~chr21:41075000-41100000,
chr21:40775000-40800000~~chr21:41075000-41100000,
chr21:40850000-40875000~~chr21:41075000-41100000,
chr21:40925000-40950000~~chr21:41075000-41100000,
chr21:41075000-41100000~~chr21:41175000-41200000,